How To Render

1. In RStudio:

Click the Render button OR use the quarto R package:

library(quarto)
quarto_render("my-reproducible-manuscript.qmd") # defaults to html
quarto_render("my-reproducible-manuscript.qmd", output_format = "pdf")

2. Terminal: quarto render (--to [output format])

quarto render
quarto render my-reproducible-manuscript.qmd # defaults to html
quarto render my-reproducible-manuscript.qmd --to pdf

Rendering to Multiple Formats

---
title: "My Reproducible Manuscript"
format: 
  html: default
  docx: default
  pdf: default
---

Then:

library(quarto)
quarto_render("my-reproducible-manuscript.qmd")

OR

quarto render my-reproducible-manuscript.qmd

Journal Formats

Besides default html/pdf/docx, Quarto offers journal templates. See also Quarto Documentation: Journals.

• acm: Association of Computing Machinery (ACM)
• plos: Public Library of Science (PLOS)
• agu: American Geophysical Union (AGU)
• elsevier: Elsevier
• biophysical-journal: Biophysical
• acs: American Chemical Society (ACS)
• jss: Journal of Statistical Software (JSS)

APA - apaquarto

Use a journal template from the start of your project (will create a new document):

• In console

quarto use template quarto-journals/<template-name>

For example:

quarto use template wjschne/apaquarto

APA - apaquarto

APA - apaquarto

Exercise

• Go to the Rendering chapter in the workshop book and refer to the instructions in the Exercise section.

• You will render your document into html and docx formats.

Sharing

• Share your manuscript

  • Open science framework (OSF)

  • Github

  • Website/book

Publish

• Publish to a quarto webpage (https://quartopub.com)

  • You can find the blue Publishing icon in the following locations:

    • The upper right of the file editor

    • The document viewer when viewing a document

    • The embedded viewer when running a Shiny application

    • The Plots pane

  • Click on icon

• Also in terminal:

quarto publish quarto-pub